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Infectious Disease Early Warning

An early detection system for infectious diseases, integrating data from outpatient clinics, hospitals, ambulance transport, pharmacies, schools, nursery schools, and elderly care facilities across Japan.

Explore the System
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Multi-Channel Data

Eight surveillance channels including outpatient, inpatient, ambulance, OTC pharmacy, nursery school, school absenteeism, elderly facilities, and laboratory testing.

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Early Detection

Syndromic surveillance identifies unusual patterns before laboratory confirmation, enabling faster public health responses to emerging outbreaks.

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Event Monitoring

Enhanced surveillance was conducted at major mass gatherings including the Hokkaido Toyako Summit 2008, APEC Yokohama 2010, and COP10 Nagoya 2010.

How Syndromic Surveillance Works

Syndromic surveillance monitors health-related data in near real-time to detect signals of infectious disease outbreaks before conventional diagnosis-based systems. By tracking symptoms and proxy indicators — such as school absenteeism, pharmacy dispensing, and ambulance transports — public health authorities can identify anomalies and respond earlier.

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Surveillance Channels

Syndromic surveillance in Japan draws on a broad range of data sources, each contributing a distinct signal for outbreak detection. These channels collectively provide a comprehensive picture of community health status, from clinical settings to everyday community indicators.

  • Outpatient (外来) — clinic visit symptom data
  • Inpatient (入院) — hospital admission surveillance
  • Ambulance Transport (救急車搬送) — emergency call patterns
  • OTC Pharmacy (OTC) — over-the-counter medication sales
  • Nursery School (保育園) — preschool absenteeism tracking
  • School Absenteeism (学校欠席) — nationwide school-based system
  • Elderly Facilities (高齢者施設) — care-home health monitoring
  • Laboratory Testing (検査) — test-ordering pattern analysis
Abstract map of Japan divided into prefectural regions, shaded in a gradient from pale gray through amber to deep red, indicating surveillance coverage intensity
School Absenteeism System

As of January 2016, approximately 23,618 schools across 25 prefectures, 6 designated cities, and 2 special wards — covering about 53% of elementary, junior high, and high schools nationwide.

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Pharmacy Surveillance

Daily influenza estimates derived from anti-influenza drug dispensing data across 10,064 participating pharmacies, with prefecture-level and designated-city breakdowns from the 2009/2010 through 2014/2015 seasons.

Daycare diarrhoea signals for early shigellosis detection

Shigellosis is an intestinal infection caused by Shigella bacteria. It spreads through the faecal–oral route, and young children in daycare settings are especially vulnerable. Common symptoms include diarrhoea, fever and stomach cramps, sometimes with blood in the stool. Laboratory confirmation remains important, but waiting for culture or molecular results can delay recognition of a cluster. Syndromic surveillance tracks illness patterns before that confirmation, giving public-health teams time to investigate.

Using daycare centre diarrhoea logs and parent sick leave patterns for syndromic surveillance of shigellosis does more than count absent children. A concurrent rise in recorded gastrointestinal symptoms and parents staying home from work can suggest that infection is circulating before individual diagnoses are reported. The clues are indirect: vomiting may reflect several infections, and an absence may have no infectious cause. Their value comes from combining them with clinical, laboratory and local context, then checking each signal against confirmed notifications.

That approach fits within a broader early-warning network. Clinics, emergency departments, ambulance calls, pharmacy information, school absenteeism, elderly-care reports and laboratory testing each reveal a different slice of illness. Japan’s multi-channel system brings these streams together to support faster outbreak response. In Australia, daycare data should add context to this network rather than operate as a stand-alone diagnostic tool or trigger an announcement on its own.

Childcare is a useful setting to observe because infections spread readily among children, while families connect centres with workplaces, schools and community services. Australia’s long-day childcare and family day care arrangements create regular close-contact groups, and paid carers leave shapes how absences appear. Warm-season gatherings and shared meals can add exposure opportunities. The purpose is to identify unusual patterns early enough for targeted checks, hygiene support and clinical follow-up.

Why daycare logs reveal more than absenteeism

A useful daycare log contains more than an attendance mark. The date, centre, symptoms, duration, age group and any laboratory status help teams distinguish scattered stomach upsets from a concentrated cluster. Counts of acute diarrhoea among children under five can be compared with the same weekday and month in previous years. Sudden linked cases warrant a closer look, even when initial tests have not confirmed Shigella.

Parent sick leave adds a different perspective. Aggregated numbers of carers absent after a centre exposure can reinforce a weak gastrointestinal signal, while a rise in leave linked to respiratory illness may point elsewhere. Access to anonymised leave data is essential; employers should not report a parent’s identity, job title or suspected diagnosis. Voluntary parent surveys can capture symptoms and exposure dates more precisely than absence records alone, provided privacy is protected.

Neither stream proves that shigellosis is present. Norovirus, rotavirus and sapovirus can produce similar symptoms, and shigellosis itself does not always cause visible blood. Analysts should not label every child with diarrhoea as a probable Shigella case. Instead, they can monitor combined indicators: diarrhoea-related absences, parent leave after reported centre exposure, visits for vomiting, and eventual stool culture or polymerase chain reaction results. These are signals for verification, not diagnoses.

Building a usable early-warning signal

The first task is a clear data dictionary. Every participating centre needs to define what counts as an acute diarrhoea episode, whether vomiting is included, and how repeat symptoms are grouped. A minimum dataset can include symptom onset date, anonymised child identifier, age band, attendance status, symptom summary and linked laboratory result. A simple feed through a secure portal may be more valuable than a sophisticated system used inconsistently. Daily reporting is useful during periods of concern, while weekly reporting can support routine monitoring.

Detection methods must account for seasonality and normal variation. Shigellosis activity in Australia often increases during warmer months, and enrolment, holidays and public-health messaging also affect attendance and reporting. An alert should compare current counts with an appropriate historical baseline for the same setting. Small centres can show large percentage swings from one or two cases, so numbers, denominators and sustained changes belong together. A modest rise across many centres may be more concerning than a sharp rise in one.

Privacy and governance belong in the design rather than being added later. Public health agencies operate under relevant statutory powers, but early-warning projects still need transparent agreements about data ownership, retention, access and reporting. De-identification should prevent identification of children and families, especially in small communities. Clear escalation thresholds help staff distinguish routine fluctuation from a signal requiring action. Thresholds should be tested against historical data and reviewed after exercises and outbreaks.

Australia meets the daycare model

Shigellosis is nationally notifiable in Australia through the National Notifiable Diseases Surveillance System, with notifications managed by state and territory public health units. Daycare diarrhoea and carer leave data can complement that process, but they should fit existing local pathways rather than create a parallel system. Pathology networks and public health laboratories can confirm suspected clusters, while notification teams provide the clinical and epidemiological context that raw absence counts lack.

Australian routines shape both exposure and reporting. Families commonly combine long-day childcare, occasional care and kindergarten, and a day off to care for a sick child may appear as paid carers leave. At a Melbourne centre, a shared birthday meal could link cases; at a Sydney centre, a classroom pattern might suggest person-to-person spread. These are hypotheses to investigate, not proof of source. A Brisbane family day care provider caring for children across several households shows why shared reporting can help.

Communication needs to fit the audience as well. Parents may have limited English proficiency, work irregular shifts or receive advice through several family members. Plain-language alerts should be available in commonly used community languages, with professional interpreters for clinical discussions. Services for Aboriginal and Torres Strait Islander communities should be involved from the design stage, including remote providers where internet access and reporting capacity differ. Co-design makes it more likely that an alert can reach families and lead to a practical response.

Lessons from Japan’s multi-channel approach

Japan’s approach demonstrates that no single source gives a complete picture. Clinic and hospital records capture people who seek care, ambulance data reveal transport patterns, pharmacy information may signal changes in treatment-seeking, and school absenteeism broadens the view beyond diagnosed illness. Monitoring of elderly-care facilities and laboratory results adds another layer. For shigellosis, daycare diarrhoea logs and parent leave patterns would sit alongside these streams, allowing analysts to test whether a rise in child illness fits a wider community trend.

The mass-gathering surveillance lessons from Tokyo’s 2020 monitoring show how temporary increases can reflect crowding, shared food, visitor movement and heightened media attention rather than a sustained transmission pattern. The lesson for Australia is to plan enhanced surveillance before major international events, define the syndromes being tracked and protect privacy while response capacity rises. Similar plans can support music festivals, sporting fixtures and large religious gatherings without treating every digestive symptom as an outbreak.

Daycare centres can prepare for the same pressures. An international event may bring visiting families, volunteer groups and changes in staff or meal arrangements. A baseline established beforehand makes later comparisons more credible. Centres should know where to report unusual symptoms, which documents can be shared safely and how advice will reach families quickly. Public health agencies can offer short training sessions on symptom reporting, hygiene and escalation instead of relying on a leaflet that staff may never see.

Turning signals into timely public health action

An alert should open a structured verification process, not a public announcement. Staff first check the completeness and timing of logs, then compare the cluster with clinical presentations, ambulance attendances and laboratory notifications. Public health clinicians can arrange stool testing where indicated and request culture, where available, to support organism and strain comparison. This distinction matters because a syndromic rise may reflect another pathogen. Confirmed exposure histories can then guide whether shared food, a particular room or person-to-person spread is more plausible.

Control measures should match the findings. For shigellosis, supervisors should reinforce handwashing with soap and water, safe nappy disposal, food-handling practices and exclusion of symptomatic children according to local public-health guidance. Alcohol-based hand rub does not replace soap and water after nappy changes or toilet use. Families need clear instructions on when a child may return, how prescribed medicines will be managed and whom to call if symptoms continue. Clear communication reduces both unnecessary alarm and delays in reporting.

Outcomes must be evaluated. Teams can compare when the signal began, when the first cases were confirmed and whether control measures interrupted transmission. False alarms can reveal which data gaps caused uncertainty. Regular feedback to participating centres also sustains reporting: staff are more likely to contribute when they can see that a report led to testing, advice or an inspection. Governance reviews should examine whether some communities were missed or burdened disproportionately by the monitoring itself.


Partnerships can turn this concept into an operational program. Childcare operators can nominate a reporting contact and agree the minimum dataset; public-health teams can provide a secure channel, baseline analysis and feedback after each alert. Laboratories, schools, pharmacies and local clinicians can contribute complementary information without exposing family identities. Japan’s integrated model and Australia’s existing notification systems provide different but compatible starting points.

Organisations interested in contributing data or coordinating an outbreak exercise can contact the surveillance network. Begin with one agreed definition of the signal, one secure reporting route and one escalation contact, then measure how quickly the combined data can support a safe response.

Technical Support

For inquiries about the syndromic surveillance systems, including the school absenteeism information collection system and pharmacy surveillance:

Contact: Yasushi Ohkusa, Senior Researcher

Institution: Infectious Disease Epidemiology Center, National Institute of Infectious Diseases

FAX: 03-5285-1129

Email: ohkusa@nih.go.jp

All inquiries accepted by FAX or email only. For school absenteeism system login issues, please contact your municipal board of education or childcare division.